AneuFinder - Analysis of Copy Number Variation in Single-Cell-Sequencing Data

AneuFinder implements functions for copy-number detection, breakpoint detection, and karyotype and heterogeneity analysis in single-cell whole genome sequencing and strand-seq data.

Last updated 27 days ago

immunooncologysoftwaresequencingsinglecellcopynumbervariationgenomicvariationhiddenmarkovmodelwholegenome

7.70 score 17 stars 37 scripts 424 downloads

chromstaR - Combinatorial and Differential Chromatin State Analysis for ChIP-Seq Data

This package implements functions for combinatorial and differential analysis of ChIP-seq data. It includes uni- and multivariate peak-calling, export to genome browser viewable files, and functions for enrichment analyses.

Last updated 27 days ago

immunooncologysoftwaredifferentialpeakcallinghiddenmarkovmodelchipseqhistonemodificationmultiplecomparisonsequencingpeakdetectionatacseq

5.23 score 8 stars 8 scripts 340 downloads

methimpute - Imputation-guided re-construction of complete methylomes from WGBS data

This package implements functions for calling methylation for all cytosines in the genome.

Last updated 27 days ago

immunooncologysoftwarednamethylationepigeneticshiddenmarkovmodelsequencingcoverage

4.11 score 13 scripts 204 downloads