AneuFinder - Analysis of Copy Number Variation in Single-Cell-Sequencing Data
AneuFinder implements functions for copy-number detection, breakpoint detection, and karyotype and heterogeneity analysis in single-cell whole genome sequencing and strand-seq data.
Last updated 4 months ago
immunooncologysoftwaresequencingsinglecellcopynumbervariationgenomicvariationhiddenmarkovmodelwholegenome
15 stars 3.49 score 83 dependencieschromstaR - Combinatorial and Differential Chromatin State Analysis for ChIP-Seq Data
This package implements functions for combinatorial and differential analysis of ChIP-seq data. It includes uni- and multivariate peak-calling, export to genome browser viewable files, and functions for enrichment analyses.
Last updated 4 months ago
immunooncologysoftwaredifferentialpeakcallinghiddenmarkovmodelchipseqhistonemodificationmultiplecomparisonsequencingpeakdetectionatacseq
1.69 score 78 dependenciesmethimpute - Imputation-guided re-construction of complete methylomes from WGBS data
This package implements functions for calling methylation for all cytosines in the genome.
Last updated 4 months ago
immunooncologysoftwarednamethylationepigeneticshiddenmarkovmodelsequencingcoverage
1.24 score 53 dependencies